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Sylvain Brohée
NeAT
- KEGG network provider
Obtain organism-specific KEGG networks from
KEGG PATHWAY
version . Click on
for help.
Web service and interface by Karoline Faust.
1. Input
Enter full species names as given in KEGG or KEGG abbreviations for organisms, separated by '/' in text field below.
Example 1: eco/ecp/ecs
Example 2: Aspergillus flavus/Aspergillus niger/afm
Example 3: reference
Click here for the full list of KEGG organism names and abbreviations
AND/OR
Upload a file which contains one organism KEGG identifier by line:
AND/OR
Enter KEGG reaction identifiers, separated by '/' in text field below (e.g. R00015/R00551):
AND/OR
Upload a file which contains one reaction KEGG identifier by line:
2. Options
Optional:
KEGG identifiers of compounds to exclude (separated by '/')
Optional:
KEGG identifiers of reactions to exclude (separated by '/')
Optional:
RPAIR classes to exclude (separated by '/')
Directed network
RPAIR network
For the conversion of reactions into reactant pairs, a file assembled from KEGG LIGAND is used, which is available
here
.
Reaction treatment:
all reactions reversible
keep irreversible reactions (only possible in directed networks!)
Optional:
The network is constructed with some
default attributes
. You can add more attributes by selecting them from the menus below, but be aware that this will slow down the network construction. Note also that you can select more than one additional attribute by pushing the Shift key.
Compound attributes
Name
Formula
Reaction/RPAIR attributes
EC numbers
Equation (not for RPAIR network)
4. Output
Network format
tab-delimited
gml
dot
visML
Email (optional)
RESET
DEMO1
DEMO2
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