RSAT
NeAT
Network Analysis Tools
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k-shortest path finding
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Pathway extraction
Pathway extraction (microme prototype)
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Sylvain Brohée
RSAT
- Pathway Extractor
Parameters
Select a Genome for seeds/node mapping
(mandatory)
--- Gene Reaction ---
Select a Network
(mandatory)
---Networks---
Directed Network
Provide seeds
(mandatory)
: Genes,Compounds,ECs,Reactions (Minimun seed size: 2 characters)
Advanced parameters
Algorithm
kWalks + Takahashi-Matsuyama
Takahashi-Matsuyama
kWalks
iterative REA
kWalks + iterative REA
Preprocess
(for RPAIR networks only)
Postprocess
Iteration number
(for kWalks or hybrid algorithms only)
Hybrid algorithms only
Percentage of input network
Compute weights with kWalks
Output
display
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