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Network Analysis Tools (NeAT)
Tutorial

Sylvain Brohée

brohee@ulb.ac.be

Karoline Faust

kfaust@ulb.ac.be

Jacques van Helden

jvhelden@ulb.ac.be

Contents
- Warning
Introduction
Network visualization and format conversion
- Introduction
  - Network visualization
  - Graph formats
- Visualisation of a co-expression network
Comparisons between networks
Node degree statistics
- Introduction
- Analysis of the node degree distribution of a biological network
Study of the neighborhood of the nodes
- Introduction
- Analysis of the neighbours of orphan nodes in an interaction protein network
Graph clustering
- Introduction
- Network clustering comparison
Influence of graph alteration and randomization on clustering
- Introduction
- Quantitative assessment of a clustering algorithm
Path finding
Metabolic path finding
KEGG network provider
Pathway inference
Bibliography
About this document ...

RSAT 2009-09-04