Index of /rsat/demo_files

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]All_hpromoterRegions_BG_model_mkv_2.oligos2016-06-23 10:01 2.0K 
[ ]Arabidopsis_thaliana_GSM1482283_MYB3R3-GFP_ChIP_peaks.bed2015-11-17 15:48 113K 
[ ]Arabidopsis_thaliana_methionine_genes_go-0009086.tab2017-08-28 14:49 7.5K 
[ ]Ballester_etal_elife_2014_4TFs_motifs.tf2018-03-01 11:47 67K 
[ ]Ballester_etal_elife_2014_hg18_cebpa_singletons.fa2017-11-20 15:15 2.5M 
[ ]Ballester_etal_elife_2014_hg18_foxa1_singletons.fa2017-11-20 15:15 2.5M 
[ ]Ballester_etal_elife_2014_hg18_hnf4a_singletons.fa2017-11-20 15:15 4.2M 
[ ]Ballester_etal_elife_2014_hg18_hnf6_singletons.fa2017-11-20 15:15 4.0M 
[ ]Ballester_etal_elife_2014_module_beyondprimates_conserved_hg18_lift_to_hg19.bed2017-11-20 15:15 38K 
[ ]Ballester_etal_elife_2014_module_beyondprimates_conserved_hg18_lift_to_hg19.varbed2017-11-20 15:15 572K 
[ ]Blow_2010_GSM348064_forebrain_p300_peaks.bed2014-07-17 13:39 91K 
[ ]Blow_2010_GSM559653_midbrain_p300_peaks.bed2017-08-28 14:49 91K 
[ ]CapStarrseq_Active_Prom_HELA_merge_IP.fasta2016-06-23 10:01 136K 
[ ]CapStarrseq_Active_Prom_K562_merge_IP.fasta2016-06-23 10:01 175K 
[ ]CapStarrseq_InactiveProm_FDR95_All_samples.fasta2016-06-23 10:01 3.4M 
[ ]Capstarr_selected_TFs.tf2016-06-23 10:01 8.1K 
[DIR]ChIP-seq_peaks/2021-02-08 22:48 -  
[ ]Dmelanogaster_eve_up5000.fasta2015-01-20 18:02 5.6K 
[ ]Dmelanogaster_segmentation_12matrices.tf2015-01-20 18:02 3.5K 
[ ]Drosophila_melanogaster_eve_segmentation_sites_pval0.001.ft2014-07-17 13:39 5.3K 
[ ]Drosophila_melanogaster_eve_segmentation_sites_pval0.001_nocomments.ft2015-02-11 09:06 2.3K 
[ ]Ecoli_metabolic_network.tab2014-07-17 13:39 220K 
[ ]HOCOMOCO_Human_Ncor0.8_cor0.85_JUND_Demo.tf2016-06-23 10:01 31K 
[ ]Homer_l13_mis3_hyper_Oct4_matrices.tf2015-10-31 02:07 13K 
[ ]Jun_Chip_seq_sequences.fasta2016-06-23 10:01 824K 
[ ]Jun_Chip_seq_sequences.fasta.zip2016-06-23 10:01 256K 
[ ]LexA.2nt_upstream-noorf-ovlp-2str.20.meme2014-07-17 13:39 19K 
[ ]LexA.2nt_upstream-noorf-ovlp-2str.20.tf2014-07-17 13:39 2.9K 
[ ]MEME_ChIP_Oct4_matrices.tf2015-12-10 12:06 19K 
[ ]MET_up800-noorf.fasta2014-07-17 13:39 13K 
[ ]MET_up800-noorf_purge_benchmark.json2017-08-28 14:49 150  
[TXT]MET_up800-noorf_purge_log.txt2017-08-28 14:49 245  
[ ]MET_up800-noorf_purged.fasta2017-08-28 14:49 13K 
[ ]Multi_algorithms_analysis_motif_set.tab2017-08-28 14:49 1.1K 
[ ]Mycoplasma_genitalium_upstream_-30_+29.fasta.gz2014-07-17 13:39 13K 
[ ]Nakamura_GSM1368207_gamma8_mm10_ICN1_peaks.bed2018-04-04 15:05 265K 
[ ]Nanog_peaks.fasta2016-06-23 10:01 4.1M 
[ ]Oct4_peaks.fasta2016-06-23 10:01 4.2M 
[ ]Oct4_vs_Sox2_motif_set.tab2015-04-28 14:23 268  
[ ]PHO_up800-noorf.fasta2014-07-17 13:39 15K 
[ ]Ppersica_Varieties.chr1.vcf.gz2019-04-11 15:15 60M 
[ ]Prunus_persica.Prunus_persica_NCBIv2.38_upstream.chr1.fasta.gz2019-04-11 15:15 5.9M 
[ ]RSAT_peak-motifs_Oct4_matrices.tf2015-12-10 12:06 19K 
[ ]SWEMBL_mmus_CEBPA_vs_mmus_Input_peaks_R0.12_nof.bed2014-07-17 13:39 47K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof.bed.gz2014-07-17 13:39 87K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof.fasta.gz2014-07-17 13:39 309K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof_200bp.fasta.gz2014-07-17 13:39 250K 
[ ]Scer_biocyc.tab2014-07-17 13:39 74K 
[ ]Sox2_peaks.fasta2016-06-23 10:01 3.9M 
[TXT]TFs_short.txt2021-02-08 22:48 37  
[ ]XYgraph_demo_data.ft2017-08-28 14:49 1.9K 
[ ]all_human_ENCODE_DNAse_mk1_bg.ol2014-09-17 10:32 2.3K 
[ ]allup500_Saccharomyces_cerevisiae_some_pattern_counts.tab2017-08-28 14:49 132K 
[ ]brachypodium_diastichon_branched_aa_pathway_GO-0009081_genes.tab2017-08-28 14:49 4.1K 
[ ]compare-matrices_demo.tf2014-07-17 13:39 5.1K 
[IMG]convert-features_demo.pat2017-08-28 14:49 1.4K 
[TXT]convert-matrix_demo_data.txt2014-07-17 13:39 1.0K 
[ ]cytomod_matrices.meme2017-08-28 14:49 6.0K 
[ ]dna-pattern_demo_seq.fa2017-08-28 14:49 4.2K 
[ ]do798+do735_mmus_hnf6_liver.transfac2014-09-17 10:32 17K 
[ ]drosophila_eve_segmentation_sites.ft2014-07-17 13:39 5.3K 
[ ]dyad_analysis_demo_seq.fa2017-08-28 14:49 5.1K 
[ ]enhancers_short.bed2021-02-08 22:48 1.1K 
[ ]feature-map_demo_data.ft2017-08-28 14:49 11K 
[ ]fetch-sequences_Schmidt_2011_mm9_CEBPA_SWEMBL_R0.12_702peaks.bed2014-07-17 13:39 47K 
[ ]footprint-discovery_LexA_matrices.tf2014-07-17 13:39 61K 
[ ]footprint-discovery_selected_yeast_genes.tab2015-03-07 14:38 262  
[ ]gavin_mcl_clusters_inf2.1.tab2014-07-17 13:39 27K 
[ ]gavin_mcl_clusters_inf2.1_cc_mips_complexes_matrix.tab2014-07-17 13:39 119K 
[ ]info-gibbs_demo_seq.fa2017-08-28 14:49 4.4K 
[TXT]isRSNP_result.csv2015-06-06 19:25 1.8K 
[ ]jaspar_stat5ab_matrix.tf2014-09-17 10:32 1.1K 
[ ]krogan_2006_mcl_vs_mips_table.tab2014-07-17 13:39 944K 
[ ]local-word-analysis_demo_seq.fa2017-08-28 14:49 12K 
[DIR]matrices_from_kmers/2021-02-08 22:48 -  
[ ]matrix-clustering_demo_peak-motifs_matrix_descriptions.tab2014-07-17 13:39 2.8K 
[ ]matrix-clustering_demo_peak-motifs_pairwise_compa.tab2014-07-17 13:39 20K 
[ ]matrix-clustering_demo_peak-motifs_result.tf2014-07-17 13:39 12K 
[ ]matrix-scan-quick_demo_matrix.tf2017-08-28 14:49 885  
[ ]matrix-scan-quick_demo_seq.fa2017-08-28 14:49 5.5K 
[ ]matrix_quality_demo_matrix.tf2017-08-28 14:49 17K 
[ ]matrix_quality_demo_seq1.fa2017-08-28 14:49 8.0K 
[ ]matrix_quality_demo_seq2.fa2017-08-28 14:49 9.6K 
[ ]mcode.mde2014-07-17 13:39 680  
[ ]merged_Homer_MEME-ChIP_peak-motifs_Oct4_matrices.tf2016-09-08 02:14 51K 
[ ]mips_complexes.tab2014-07-17 13:39 47K 
[TXT]net_short.tsv2021-02-08 22:48 29  
[ ]oligo_analysis_demo_seq.fa2017-08-28 14:49 12K 
[ ]peak-motifs_GSM348066_limb_p300_1000peaks.fa2014-07-17 13:39 706K 
[ ]peak-motifs_GSM348066_limb_p300_2105peaks.fa2014-07-17 13:39 1.5M 
[ ]peak-motifs_GSM559652_heart_p300_1000peaks.fa2014-07-17 13:39 840K 
[ ]peak-motifs_GSM559652_heart_p300_3597peaks.fa2014-07-17 13:39 2.5M 
[ ]peak-motifs_Oct4_matrices.tf2014-07-17 13:39 23K 
[TXT]peak-motifs_Oct4_metric_ranges.txt2015-08-27 15:46 48  
[ ]peak-motifs_Sox2_matrices.tf2015-04-28 14:23 17K 
[ ]peak-motifs_Sox2_vs_Oct4_matrices.tf2015-04-28 14:23 11K 
[ ]peak-motifs_result_Chen_Oct4_matrices.tf2014-07-17 13:39 12K 
[ ]peak-motifs_result_Chen_Oct4_permuted_matrices.tf2015-01-29 14:36 23K 
[DIR]protein_interactions/2021-02-08 22:48 -  
[ ]rdm_test.tab2014-07-17 13:39 6.9K 
[ ]roc-stats_demo_regulonDB_cg_stringcoex_inter-Q.tab2014-07-17 13:39 138K 
[ ]seq_mm9_galaxy.bed2014-07-17 13:39 592  
[ ]seq_mm9_galaxy_matrix-scan.ft2014-07-17 13:39 347  
[ ]string_coexpression_mcl_clusters.tab2014-07-17 13:39 227K 
[ ]string_coexpression_top_edges.gml2014-07-17 13:39 681K 
[ ]string_yeast_gene_coexpression_names_gt_550.tab2014-07-17 13:39 83K 
[ ]test.tab2017-08-28 14:49 132K 
[ ]test_yeast.bed2018-01-23 14:51 306  
[ ]variation-scan_results_WeireauchSNPs_vs_jaspar_core_vertebrates.tab2017-08-28 14:49 10K 
[ ]variation_demo_set.rsat-var2017-02-27 00:30 757  
[ ]variation_demo_set.varseq2016-09-08 02:14 3.9K 
[TXT]variation_demo_set.vcf2015-01-20 18:02 1.5K 
[ ]variation_demo_set_MWeirauch_cell_2013_15SNPs_TFs.tf2015-01-20 18:01 93K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.gvf2015-01-20 18:01 3.4K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.rsat-var2015-01-20 18:01 935  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.varBed2018-01-25 21:12 935  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.varseq2016-06-23 10:01 3.3K 
[TXT]variation_demo_set_MWeirauch_cell_2014_15SNPs_IDs.txt2015-01-26 16:57 151  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs_TFs.tf2015-02-25 14:38 68K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs_TFs_relfreq.tf2015-02-25 14:38 92K 
[TXT]variation_testfile.vcf2017-07-18 08:46 3.5K 
[ ]varscan_weirauch-snps_vs_JASPAR_pval0.001_pvalratio10.tab2015-03-26 22:14 10K 
[ ]yeast_string_database_graph_converted_weights.tab2014-07-17 13:39 304K