; parse-gtf -v 2 -i $RSAT/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.gtf -fasta $RSAT/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.pep.all.fa -org_name Leishmania_major.ASM272v2.34 -task all -taxid 347515 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome ; Program version 1.48 ; Input files ; gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.gtf ; fasta_pep /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.pep.all.fa ; fasta_rm /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.dna_rm.genome.fa ; fasta /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.dna.toplevel.fa ; Output files ; tts_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_tts.gtf ; log /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/log.txt ; stop_codon_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_stop_codon.gtf ; five_prime_utr_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_five_prime_utr.gtf ; exon_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_exon.gtf ; fasta_pep_lengths /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.pep.all_lengths.tab ; organism /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/organism.tab ; fasta_lengths /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.dna.toplevel_lengths.tab ; gene /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/gene.tab ; start_codon /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/start_codon.tab ; exon /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/exon.tab ; gene_end_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_gene_end.gtf ; contigs_txt_rm /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/contigs_rm.txt ; gene_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_gene.gtf ; fasta_rm_lengths /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34.dna_rm.genome_lengths.tab ; peptidic_sequences /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/peptidic_sequences.fasta ; contigs_txt /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/contigs.txt ; contig /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/contig.tab ; stop_codon /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/stop_codon.tab ; start_codon_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_start_codon.gtf ; tss_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_tss.gtf ; transcript_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_transcript.gtf ; gene_start_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_gene_start.gtf ; contig_rm /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/contig_rm.tab ; three_prime_utr_gtf /export/home1/rsat/rsat/data/genomes/Leishmania_major.ASM272v2.34/genome/Leishmania_major.ASM272v2.34_three_prime_utr.gtf ; transcript /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/transcript.tab ; cds /export/home1/rsat/rsat/public_html/data/genomes/Leishmania_major.ASM272v2.34/genome/cds.tab ; Parsed rows per feature type ; cds 8312 ; exon 9461 ; gene 9379 ; start_codon 8306 ; stop_codon 8305 ; transcript 9379 ; Parsed rows per contig ; Contig Total cds exon gene start stop transcript ; 1 510 85 85 85 85 85 85 ; 10 878 142 152 150 142 142 150 ; 11 846 132 154 148 132 132 148 ; 12 849 141 142 142 141 141 142 ; 13 1020 170 170 170 170 170 170 ; 14 936 152 162 159 152 152 159 ; 15 1069 163 196 192 163 163 192 ; 16 1053 173 180 177 173 173 177 ; 17 958 157 163 162 157 157 162 ; 18 1167 170 219 219 170 170 219 ; 19 1068 177 179 179 177 177 179 ; 2 633 74 139 136 74 74 136 ; 20 1350 174 276 276 174 174 276 ; 21 1378 226 235 233 225 226 233 ; 22 1051 166 187 183 166 166 183 ; 23 1282 196 236 229 196 196 229 ; 24 1449 237 246 246 237 237 246 ; 25 1731 254 325 322 254 254 322 ; 26 2314 276 499 495 275 274 495 ; 27 1950 264 388 385 264 264 385 ; 28 1904 316 320 318 316 316 318 ; 29 1787 296 302 300 295 294 300 ; 3 579 95 100 97 95 95 97 ; 30 2414 396 410 408 396 396 408 ; 31 2032 330 351 347 328 329 347 ; 32 2562 424 430 430 424 424 430 ; 33 2375 366 429 424 366 366 424 ; 34 2943 481 500 500 481 481 500 ; 35 3443 533 616 614 533 533 614 ; 36 4540 730 788 781 730 730 781 ; 4 775 128 131 130 128 128 130 ; 5 850 124 160 159 124 124 159 ; 6 809 134 137 135 134 134 135 ; 7 774 128 133 130 127 126 130 ; 8 810 133 139 136 133 133 136 ; 9 1053 169 182 182 169 169 182 ; Host name rsat01 ; Job started 2017-02-27.025019 ; Job done 2017-02-27.025928 ; Seconds 3.55 ; user 3.55 ; system 0.18 ; cuser 534.72 ; csystem 14.08