; parse-gtf -v 2 -i $RSAT/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.gtf -fasta $RSAT/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.pep.all.fa -org_name Bigelowiella_natans.Bigna1.34 -task all -taxid 753081 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome ; Program version 1.48 ; Input files ; fasta /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.dna.toplevel.fa ; fasta_pep /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.pep.all.fa ; gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.gtf ; fasta_rm /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.dna_rm.genome.fa ; Output files ; start_codon_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_start_codon.gtf ; stop_codon_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_stop_codon.gtf ; contigs_txt /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/contigs.txt ; fasta_rm_lengths /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.dna_rm.genome_lengths.tab ; tts_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_tts.gtf ; start_codon /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/start_codon.tab ; organism /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/organism.tab ; five_prime_utr_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_five_prime_utr.gtf ; peptidic_sequences /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/peptidic_sequences.fasta ; gene_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_gene.gtf ; tss_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_tss.gtf ; fasta_lengths /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.dna.toplevel_lengths.tab ; stop_codon /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/stop_codon.tab ; contigs_txt_rm /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/contigs_rm.txt ; transcript /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/transcript.tab ; transcript_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_transcript.gtf ; fasta_pep_lengths /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34.pep.all_lengths.tab ; cds /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/cds.tab ; contig_rm /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/contig_rm.tab ; contig /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/contig.tab ; exon_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_exon.gtf ; exon /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/exon.tab ; gene_end_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_gene_end.gtf ; gene /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/gene.tab ; three_prime_utr_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_three_prime_utr.gtf ; gene_start_gtf /export/home1/rsat/rsat/data/genomes/Bigelowiella_natans.Bigna1.34/genome/Bigelowiella_natans.Bigna1.34_gene_start.gtf ; log /export/home1/rsat/rsat/public_html/data/genomes/Bigelowiella_natans.Bigna1.34/genome/log.txt ; Parsed rows per feature type ; cds 188829 ; exon 192659 ; five_prime_utr 5144 ; gene 22325 ; start_codon 20498 ; stop_codon 20583 ; three_prime_utr 7636 ; transcript 22325 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; scaffold_1 16664 6666 6776 162 710 669 678 293 710 ; scaffold_10 8661 3348 3402 91 430 412 419 129 430 ; scaffold_100 1725 677 688 23 81 72 73 30 81 ; scaffold_101 1697 694 697 11 71 68 69 16 71 ; scaffold_102 1552 606 612 22 74 70 72 22 74 ; scaffold_103 1668 637 689 43 74 60 62 29 74 ; scaffold_104 1358 536 547 20 65 58 57 10 65 ; scaffold_105 1198 460 469 12 64 57 59 13 64 ; scaffold_106 1126 431 450 5 60 49 51 20 60 ; scaffold_107 1444 542 584 23 65 57 59 49 65 ; scaffold_108 1339 527 543 30 56 51 51 25 56 ; scaffold_109 1295 489 507 15 68 60 61 27 68 ; scaffold_11 7389 2894 2963 81 351 315 321 113 351 ; scaffold_110 1382 541 550 9 73 61 59 16 73 ; scaffold_111 1160 453 455 7 60 54 54 17 60 ; scaffold_112 1224 476 491 13 57 51 53 26 57 ; scaffold_113 1242 484 498 17 60 56 54 13 60 ; scaffold_114 1283 467 506 24 68 54 53 43 68 ; scaffold_115 986 385 388 9 51 46 47 9 51 ; scaffold_116 1341 531 552 6 62 51 51 26 62 ; scaffold_117 1070 417 421 9 55 48 48 17 55 ; scaffold_118 1161 448 472 14 55 47 46 24 55 ; scaffold_119 957 347 351 11 61 57 58 11 61 ; scaffold_12 7160 2815 2858 85 337 309 313 106 337 ; scaffold_120 941 354 357 9 55 53 51 7 55 ; scaffold_121 906 349 352 9 47 45 46 11 47 ; scaffold_122 1058 428 437 14 41 40 38 19 41 ; scaffold_123 834 328 337 8 41 35 35 9 41 ; scaffold_124 850 329 345 9 39 34 35 20 39 ; scaffold_125 846 338 344 10 38 33 33 12 38 ; 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scaffold_91 2075 838 843 10 95 86 88 20 95 ; scaffold_92 1899 748 767 28 86 78 79 27 86 ; scaffold_93 2052 801 839 24 92 83 82 39 92 ; scaffold_94 1919 740 760 24 89 83 83 51 89 ; scaffold_95 2049 826 843 18 83 80 80 36 83 ; scaffold_96 1769 677 688 20 93 85 84 29 93 ; scaffold_97 1579 654 660 11 62 58 59 13 62 ; scaffold_98 1513 545 565 26 88 80 79 42 88 ; scaffold_99 1537 558 585 30 87 79 80 31 87 ; Host name rsat01 ; Job started 2017-02-27.011621 ; Job done 2017-02-27.013519 ; Seconds 21.89 ; user 21.89 ; system 0.56 ; cuser 1091.55 ; csystem 27.87