NeAT - compare-classes

Compare two classifications (clustering results, functional classes, ...), and assess the statistical significance of common members between each pair of classes.
This program was developed Jacques van Helden, with a contribution of Joseph Tran for a first prototype.

Query classesReference classes
Upload query classes from file :
Upload reference classes from file :
Score column (optional; if specified, must be valid for both query and reference classes)
Compare query classes to reference classes
Compare query classes to query classes (do not specify reference classes)


Output options
   Output format
Class pairs
Reference/query matrix
Class pairsReference/query matrix
Return fields
  


Thresholds Lower Upper
Query size
Reference size
Intersection size
Significance
P-value
E-value
Jaccard similarity
Sorensen similarity
Mutual information
Dot product
(Only relevant if a score column is specified)

Intersection
Significance
Jaccard similarity
Sorensen similarity
Dot product
E-value
P-value
Mutual information