; parse-gtf -v 2 -i $RSAT/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.gtf -fasta $RSAT/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.pep.all.fa -org_name Plasmodium_vivax.ASM241v2.34 -task all -taxid 5855 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome ; Program version 1.48 ; Input files ; fasta_rm /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.dna_rm.genome.fa ; fasta_pep /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.pep.all.fa ; fasta /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.dna.toplevel.fa ; gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.gtf ; Output files ; cds /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/cds.tab ; start_codon /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/start_codon.tab ; fasta_pep_lengths /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.pep.all_lengths.tab ; log /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/log.txt ; transcript /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/transcript.tab ; start_codon_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_start_codon.gtf ; gene_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_gene.gtf ; exon /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/exon.tab ; contigs_txt /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/contigs.txt ; gene_end_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_gene_end.gtf ; contig_rm /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/contig_rm.tab ; fasta_rm_lengths /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.dna_rm.genome_lengths.tab ; tss_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_tss.gtf ; peptidic_sequences /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/peptidic_sequences.fasta ; transcript_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_transcript.gtf ; gene /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/gene.tab ; fasta_lengths /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34.dna.toplevel_lengths.tab ; gene_start_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_gene_start.gtf ; stop_codon_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_stop_codon.gtf ; contig /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/contig.tab ; contigs_txt_rm /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/contigs_rm.txt ; stop_codon /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/stop_codon.tab ; three_prime_utr_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_three_prime_utr.gtf ; exon_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_exon.gtf ; five_prime_utr_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_five_prime_utr.gtf ; tts_gtf /export/home1/rsat/rsat/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/Plasmodium_vivax.ASM241v2.34_tts.gtf ; organism /export/home1/rsat/rsat/public_html/data/genomes/Plasmodium_vivax.ASM241v2.34/genome/organism.tab ; Parsed rows per feature type ; cds 13331 ; exon 13399 ; five_prime_utr 1879 ; gene 5455 ; start_codon 5328 ; stop_codon 4482 ; three_prime_utr 1337 ; transcript 5455 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 1481 360 369 54 175 168 144 36 175 ; 10 2873 719 727 113 325 317 260 87 325 ; 11 4450 1183 1192 166 468 460 371 142 468 ; 12 6611 1745 1750 273 695 690 551 212 695 ; 13 4288 1150 1154 156 449 445 363 122 449 ; 14 6360 1608 1614 296 697 691 586 171 697 ; 2 1436 377 382 42 159 154 130 33 159 ; 3 2046 555 563 63 217 208 184 39 217 ; 4 1978 540 541 57 208 207 181 36 208 ; 5 2960 789 792 107 313 310 259 77 313 ; 6 2316 620 623 69 247 244 217 49 247 ; 7 3299 881 881 106 351 350 296 83 351 ; 8 3517 916 920 140 377 373 309 105 377 ; 9 4241 1153 1156 160 434 432 359 113 434 ; DS480758 7 2 2 0 1 1 0 0 1 ; DS480803 6 2 2 0 1 0 0 0 1 ; DS480811 6 1 1 0 1 1 1 0 1 ; DS480812 9 2 2 1 1 1 0 1 1 ; DS480813 7 2 2 0 1 0 0 1 1 ; DS480817 6 1 1 1 1 0 0 1 1 ; DS480818 6 2 2 0 1 0 0 0 1 ; DS480819 8 2 2 1 1 1 0 0 1 ; DS480821 7 2 2 0 1 1 0 0 1 ; DS480832 10 3 3 0 1 1 1 0 1 ; DS480834 6 1 1 1 1 1 0 0 1 ; DS480841 8 2 2 1 1 1 0 0 1 ; DS480867 6 2 2 0 1 0 0 0 1 ; DS480938 10 3 3 0 1 1 0 1 1 ; DS480951 10 3 3 0 1 1 1 0 1 ; DS480966 8 1 1 1 1 1 1 1 1 ; DS480998 8 2 2 0 1 1 1 0 1 ; DS481050 6 1 1 0 1 1 1 0 1 ; DS481068 10 3 3 0 1 1 1 0 1 ; DS481069 10 3 3 0 1 1 1 0 1 ; DS481083 11 3 3 1 1 1 1 0 1 ; DS481098 5 1 1 0 1 0 0 1 1 ; DS481109 8 2 2 1 1 0 0 1 1 ; DS481135 10 3 3 0 1 1 1 0 1 ; DS481140 8 2 2 0 1 1 1 0 1 ; DS481141 11 3 3 1 1 1 1 0 1 ; DS481145 8 2 2 0 1 1 1 0 1 ; DS481151 10 3 3 0 1 1 1 0 1 ; DS481160 12 4 4 0 1 1 1 0 1 ; DS481169 12 4 4 0 1 1 1 0 1 ; DS481197 18 5 5 0 2 2 2 0 2 ; DS481229 9 2 2 1 1 0 1 1 1 ; DS481243 8 2 2 1 1 0 1 0 1 ; DS481248 10 3 3 0 1 1 1 0 1 ; DS481257 9 2 2 0 1 1 1 1 1 ; DS481260 8 2 2 0 1 1 1 0 1 ; DS481269 7 2 2 0 1 0 1 0 1 ; DS481275 8 2 2 0 1 1 1 0 1 ; DS481289 11 3 3 1 1 1 1 0 1 ; DS481307 8 2 2 1 1 0 1 0 1 ; DS481328 11 3 3 1 1 1 1 0 1 ; DS481331 8 2 2 0 1 1 1 0 1 ; DS481380 10 3 3 0 1 1 1 0 1 ; DS481404 10 3 3 0 1 1 1 0 1 ; DS481409 8 2 2 1 1 0 1 0 1 ; DS481441 5 1 1 1 1 0 0 0 1 ; DS481442 6 2 2 0 1 0 0 0 1 ; DS481456 10 3 3 0 1 1 1 0 1 ; DS481489 10 3 3 0 1 1 1 0 1 ; DS481491 6 1 1 1 1 1 0 0 1 ; DS481492 6 1 1 1 1 1 0 0 1 ; DS481521 8 2 2 1 1 0 1 0 1 ; DS481569 8 2 2 1 1 0 1 0 1 ; DS481585 8 2 2 0 1 1 1 0 1 ; DS481602 10 3 3 0 1 1 1 0 1 ; DS481607 8 2 2 0 1 1 1 0 1 ; DS481620 6 1 1 0 1 1 1 0 1 ; DS481621 10 3 3 0 1 1 1 0 1 ; DS481647 8 2 2 1 1 0 1 0 1 ; DS481653 6 2 2 0 1 0 0 0 1 ; DS481662 8 2 2 0 1 1 1 0 1 ; DS481683 10 3 3 0 1 1 1 0 1 ; DS481684 9 3 3 0 1 1 0 0 1 ; DS481686 8 2 2 1 1 0 1 0 1 ; DS481691 8 2 2 1 1 0 1 0 1 ; DS481694 6 2 2 0 1 0 0 0 1 ; DS481696 7 2 2 0 1 1 0 0 1 ; DS481697 6 1 1 1 1 0 1 0 1 ; DS481703 7 2 2 0 1 0 1 0 1 ; DS481704 8 2 2 1 1 0 1 0 1 ; DS481712 10 3 3 0 1 1 1 0 1 ; DS481720 18 5 5 0 2 2 2 0 2 ; DS481724 11 3 3 1 1 1 1 0 1 ; DS481738 4 1 1 0 1 0 0 0 1 ; DS481739 8 2 2 0 1 1 1 0 1 ; DS481749 8 2 2 1 1 0 1 0 1 ; DS481750 9 2 2 1 1 1 1 0 1 ; DS481761 6 1 1 1 1 0 0 1 1 ; DS481763 7 2 2 0 1 0 1 0 1 ; DS481769 5 1 1 0 1 1 0 0 1 ; DS481774 7 2 2 0 1 1 0 0 1 ; DS481787 6 1 1 1 1 0 1 0 1 ; DS481788 8 2 2 0 1 1 1 0 1 ; DS481795 8 2 2 1 1 0 1 0 1 ; DS481812 11 3 3 1 1 1 1 0 1 ; DS481818 7 2 2 0 1 1 0 0 1 ; DS481832 10 3 3 0 1 1 1 0 1 ; DS481857 9 3 3 0 1 0 1 0 1 ; DS481874 8 2 2 0 1 1 1 0 1 ; DS481876 10 3 3 0 1 1 1 0 1 ; DS481879 10 3 3 0 1 1 1 0 1 ; DS481881 8 2 2 1 1 0 0 1 1 ; DS481884 10 3 3 0 1 1 0 1 1 ; DS481898 11 3 3 1 1 1 1 0 1 ; DS481988 10 3 3 0 1 1 1 0 1 ; DS482000 6 1 1 1 1 0 1 0 1 ; DS482001 8 2 2 0 1 1 1 0 1 ; DS482015 10 3 3 0 1 1 1 0 1 ; DS482025 7 2 2 0 1 0 1 0 1 ; DS482061 5 1 1 0 1 0 1 0 1 ; DS482067 9 3 3 1 1 0 0 0 1 ; DS482114 8 2 2 1 1 0 1 0 1 ; DS482123 7 2 2 0 1 1 0 0 1 ; DS482134 7 2 2 0 1 1 0 0 1 ; DS482146 5 1 1 0 1 0 1 0 1 ; DS482163 8 2 2 1 1 0 1 0 1 ; DS482168 11 3 3 1 1 1 1 0 1 ; DS482192 10 3 3 0 1 1 1 0 1 ; DS482217 6 1 1 1 1 0 1 0 1 ; DS482229 8 2 2 1 1 0 1 0 1 ; DS482273 8 2 2 0 1 1 1 0 1 ; DS482318 6 1 1 0 1 0 1 1 1 ; DS482369 7 2 2 0 1 1 0 0 1 ; DS483088 8 2 2 1 1 0 0 1 1 ; DS483090 18 5 5 0 2 2 2 0 2 ; DS483092 19 5 5 1 2 2 2 0 2 ; DS483093 13 4 4 0 1 1 1 1 1 ; DS483098 10 3 3 0 1 1 1 0 1 ; DS483099 10 3 3 0 1 1 0 1 1 ; DS483102 20 6 6 0 2 2 2 0 2 ; DS483103 10 3 3 0 1 1 1 0 1 ; DS483110 10 3 3 0 1 1 1 0 1 ; DS483111 17 5 5 0 2 2 1 0 2 ; DS483113 12 4 4 0 1 1 1 0 1 ; DS483116 20 6 6 0 2 2 2 0 2 ; DS483117 14 4 4 0 2 1 1 0 2 ; DS483119 14 3 3 1 2 2 1 0 2 ; DS483120 9 3 3 0 1 0 1 0 1 ; DS483121 12 4 4 0 1 1 1 0 1 ; DS483122 10 3 3 0 1 1 1 0 1 ; DS483124 8 2 2 0 1 1 1 0 1 ; DS483125 20 6 6 0 2 2 2 0 2 ; DS483127 10 3 3 0 1 1 1 0 1 ; DS483129 10 3 3 0 1 1 1 0 1 ; DS483131 10 3 3 0 1 1 1 0 1 ; DS483132 8 2 2 1 1 0 1 0 1 ; DS483133 16 4 4 0 2 2 1 1 2 ; DS483135 10 3 3 0 1 1 1 0 1 ; DS483136 18 5 5 0 2 2 1 1 2 ; DS483137 19 6 6 0 2 2 1 0 2 ; DS483141 8 2 2 1 1 0 1 0 1 ; DS483143 18 5 5 0 2 2 2 0 2 ; DS483144 16 4 4 1 2 2 1 0 2 ; DS483146 19 6 6 0 2 1 2 0 2 ; DS483149 18 5 5 0 2 2 2 0 2 ; DS483150 8 2 2 0 1 1 1 0 1 ; DS483153 8 2 2 0 1 1 1 0 1 ; DS483156 8 2 2 0 1 1 1 0 1 ; DS483165 6 1 1 0 1 1 1 0 1 ; DS483167 8 2 2 0 1 1 1 0 1 ; DS483168 10 3 3 0 1 1 1 0 1 ; DS483169 8 2 2 0 1 1 1 0 1 ; DS483172 10 3 3 0 1 1 1 0 1 ; DS483173 7 2 2 0 1 0 1 0 1 ; DS483174 10 3 3 0 1 1 1 0 1 ; DS483176 8 2 2 1 1 0 1 0 1 ; DS483178 10 3 3 0 1 1 0 1 1 ; DS483179 7 2 2 0 1 0 1 0 1 ; DS483181 20 6 6 0 2 2 2 0 2 ; DS483184 10 3 3 0 1 1 1 0 1 ; DS483187 10 3 3 0 1 1 1 0 1 ; DS483192 8 2 2 0 1 1 1 0 1 ; DS483195 10 3 3 0 1 1 1 0 1 ; DS483196 9 3 3 0 1 1 0 0 1 ; DS483204 10 3 3 0 1 1 0 1 1 ; DS483205 8 2 2 0 1 1 1 0 1 ; DS483207 10 3 3 0 1 1 1 0 1 ; DS483212 17 5 5 0 2 2 1 0 2 ; DS483213 10 3 3 0 1 1 1 0 1 ; DS483214 10 3 3 0 1 1 1 0 1 ; DS483215 12 4 4 0 1 1 1 0 1 ; DS483217 10 3 3 0 1 1 1 0 1 ; DS483218 8 2 2 0 1 1 1 0 1 ; DS483219 8 2 2 0 1 1 1 0 1 ; DS483228 10 3 3 0 1 1 1 0 1 ; DS483233 10 3 3 0 1 1 1 0 1 ; DS483236 7 2 2 0 1 0 1 0 1 ; DS483237 14 5 5 0 1 1 1 0 1 ; DS483240 8 2 2 0 1 1 1 0 1 ; DS483242 10 3 3 0 1 1 1 0 1 ; DS483246 18 5 5 0 2 2 2 0 2 ; DS483247 12 4 4 0 1 1 1 0 1 ; DS483248 28 6 6 0 4 4 4 0 4 ; DS483266 5 1 1 0 1 1 0 0 1 ; DS483267 6 1 1 1 1 0 0 1 1 ; DS483285 5 1 1 0 1 1 0 0 1 ; DS483286 5 1 1 0 1 1 0 0 1 ; DS483290 5 1 1 0 1 1 0 0 1 ; DS483296 6 1 1 0 1 1 1 0 1 ; DS483324 6 1 1 1 1 0 1 0 1 ; DS483326 10 3 3 0 1 1 1 0 1 ; DS483332 6 1 1 1 1 0 1 0 1 ; DS483333 6 1 1 0 1 1 1 0 1 ; DS483334 7 2 2 0 1 1 0 0 1 ; DS483335 5 1 1 0 1 1 0 0 1 ; DS483338 6 1 1 0 1 1 1 0 1 ; DS483340 6 1 1 0 1 1 1 0 1 ; DS483346 10 3 3 0 1 1 1 0 1 ; DS483347 6 1 1 1 1 1 0 0 1 ; DS483348 6 1 1 1 1 0 1 0 1 ; DS483352 11 3 3 0 1 1 1 1 1 ; DS483353 6 1 1 0 1 1 1 0 1 ; DS483354 6 1 1 0 1 1 1 0 1 ; DS483355 6 1 1 0 1 1 1 0 1 ; DS483356 6 1 1 0 1 1 1 0 1 ; DS483357 6 1 1 0 1 1 1 0 1 ; DS483358 6 1 1 0 1 1 1 0 1 ; DS483360 7 1 1 1 1 1 1 0 1 ; DS483361 5 1 1 0 1 1 0 0 1 ; DS483365 6 1 1 0 1 1 1 0 1 ; DS483369 5 1 1 0 1 1 0 0 1 ; DS483370 5 1 1 0 1 0 1 0 1 ; DS483371 5 1 1 0 1 1 0 0 1 ; DS483372 6 1 1 0 1 1 1 0 1 ; DS483373 6 1 1 0 1 1 1 0 1 ; DS483374 6 1 1 0 1 1 1 0 1 ; DS483376 7 2 2 0 1 1 0 0 1 ; DS483377 7 1 1 1 1 1 1 0 1 ; DS483381 7 1 1 1 1 1 1 0 1 ; DS483383 6 1 1 0 1 1 1 0 1 ; DS483387 6 1 1 0 1 1 1 0 1 ; DS483389 6 1 1 1 1 1 0 0 1 ; DS483390 7 1 1 1 1 1 1 0 1 ; DS483397 13 3 3 0 2 2 1 0 2 ; DS483399 34 9 9 0 4 4 4 0 4 ; DS483400 36 10 10 0 4 4 4 0 4 ; DS483402 30 8 8 2 3 3 3 0 3 ; DS483403 37 8 8 2 5 4 4 1 5 ; DS483406 26 7 7 0 3 3 3 0 3 ; DS483407 14 3 3 0 2 2 1 1 2 ; DS483408 26 7 7 0 3 3 3 0 3 ; DS483409 28 8 8 0 3 3 3 0 3 ; DS483410 16 4 4 0 2 2 2 0 2 ; DS483411 49 14 14 1 5 5 5 0 5 ; DS483412 22 7 7 0 2 2 2 0 2 ; DS483413 33 8 8 2 4 3 4 0 4 ; DS483414 16 4 4 0 2 2 2 0 2 ; DS483415 46 13 13 0 5 5 5 0 5 ; DS483417 50 12 12 1 6 6 5 2 6 ; DS483419 161 36 36 8 20 19 17 5 20 ; DS483421 7 2 2 0 1 1 0 0 1 ; DS483424 6 1 1 1 1 0 1 0 1 ; DS483427 18 5 5 0 2 2 2 0 2 ; DS483430 5 1 1 0 1 1 0 0 1 ; DS483435 30 9 9 0 3 3 3 0 3 ; DS483447 6 1 1 0 1 1 1 0 1 ; DS483450 6 1 1 0 1 1 1 0 1 ; DS483451 7 1 1 0 1 1 1 1 1 ; DS483452 6 1 1 0 1 1 1 0 1 ; DS483453 7 1 1 1 1 1 1 0 1 ; DS483456 7 1 1 1 1 1 1 0 1 ; DS483458 20 6 6 0 2 2 2 0 2 ; DS483459 30 9 9 0 3 3 3 0 3 ; Host name rsat01 ; Job started 2017-02-27.052939 ; Job done 2017-02-27.053556 ; Seconds 3.5 ; user 3.5 ; system 0.41 ; cuser 365.38 ; csystem 12.74